General information

Jav




Jav (Just Another Viewer) is program to visualize structural models and electron density maps.

Jav is  distributed as add-on with Sir2011 (Burla, Caliandro, Camalli, Carrozzini, Cascarano, Giacovazzo, Mallamo, Mazzone, Polidori, Spagna, 2011) or included  in the package Il Milione (Burla, Caliandro, Camalli, Carrozzini, Cascarano, De Caro, Giacovazzo, Polidori, Siliqi, 2007)


The program uses some CCP4 (Collaborative Computer Project 4, Daresbury Laboratory, UK) libraries in accordance with the CCP4 License Agreement (clause 2.1.2). The program uses also FFTw  (Frigo and Johnson, 2005), GTK Cairo and OpenGL libraries which are distributed under the GPL (GNU General Public License).


The graphical representation of the electron density map has been realized using some routines from MarchingCubes by Thomas Lewiner (Math Dept, PUC-Rio).


The graphical representation of the secondary structure of proteins is based on the paper by M. Carson (1997) .


The program is available for Microsoft Windows, Linux and Mac  platforms (please refer to Sir2011 or IlMilione installation).


Authors:


G.L. Cascarano, C. Cuocci, S. Maggi, M. Mallamo

Istituto di Cristallografia(IC), CNR, Bari, Italy



Support:


E-mail: sirmail@ic.cnr.it






Copyright © 2011, Institute of Crystallography - Cnr Italy

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